Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Nlrp6 ENSRNOG00000045677

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Description

NLR family, pyrin domain containing 6 [Source:RGD Symbol;Acc:708549]

Gene Synonyms

Avr, LOC100912017, LOC108348167, LOC171390, Nalp6, Navr, Navr/Avr, Non-AVR

Location

Primary_assembly 1: 205,434,484-205,441,245 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 66 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000019808.8	Nlrp6-201	3662	908aa	ENSRNOP00000019808.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q9Z4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000158943.1	Nlrp6-203	3549	894aa	ENSRNOP00000109810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000050551.7	Nlrp6-202	3510	881aa	ENSRNOP00000044415.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QLV1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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