Summary
- Splice variants
- Transcript comparison
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Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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Genetic Variation
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Pathway
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Gene: Efcab3 ENSRNOG00000042255

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Description

EF-hand calcium binding domain 3 [Source:RGD Symbol;Acc:1305423]

Gene Synonyms

LOC303589, LOC686084, MGC156757, RGD1305423

Location

Primary_assembly 10: 90,084,397-90,577,144 forward strand.

GRCr8:CM070400.1

About this gene

This gene has 4 transcripts (splice variants) and 55 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000150247.1	Efcab3-204	19097	6222aa	ENSRNOP00000104824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000143176.1	Efcab3-203	18937	6158aa	ENSRNOP00000106234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000097007.2	Efcab3-202	18058	5838aa	ENSRNOP00000093703.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AI24	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000008019.8	Efcab3-201	2083	442aa	ENSRNOP00000008019.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LN12	-

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Summary

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