Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LOC102549548 ENSRNOG00000039860

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Description

uncharacterized LOC102549548 [Source:RGD Symbol;Acc:7573585]

Gene Synonyms

AC126960.1

Location

Primary_assembly 4: 29,067,743-29,096,327 reverse strand.

mRatBN7.2:CM026977.1

About this gene

This gene has 2 transcripts (splice variants), 51 orthologues and 72 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000047419.4	LOC102549548-202	1062	320aa	ENSRNOP00000049860.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LZE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000031118.7	LOC102549548-201	966	288aa	ENSRNOP00000034116.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LX92	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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