Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
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ID History
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Gene: LOC500990 ENSRNOG00000038867

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Description

similar to RIKEN cDNA 4931429L15 [Source:RGD Symbol;Acc:1561633]

Gene Synonyms

MGC125235

Location

Primary_assembly 8: 46,595,312-46,610,570 reverse strand.

mRatBN7.2:CM026981.1

About this gene

This gene has 2 transcripts (splice variants) and 18 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000077748.2	LOC500990-202	1670	367aa	ENSRNOP00000068861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JTV6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000059386.3	LOC500990-201	1431	298aa	ENSRNOP00000056143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3KR84	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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