Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Lims1 ENSRNOG00000037765

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Description

LIM zinc finger domain containing 1 [Source:RGD Symbol;Acc:1560732]

Gene Synonyms

LOC499443, Pinch1, RGD1560732

Location

Primary_assembly 20: 26,852,996-26,961,606 forward strand.

GRCr8:CM070410.1

About this gene

This gene has 6 transcripts (splice variants), 232 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101365.2	Lims1-204	4275	398aa	ENSRNOP00000087973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6W3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000098893.2	Lims1-203	4227	373aa	ENSRNOP00000082999.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GA69	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000112599.2	Lims1-206	4213	396aa	ENSRNOP00000078506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKY9	-
ENSRNOT00000094679.2	Lims1-202	4163	348aa	ENSRNOP00000078972.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZPU7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000064288.5	Lims1-201	1825	331aa	ENSRNOP00000062647.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0KUC5	-
ENSRNOT00000105423.2	Lims1-205	948	315aa	ENSRNOP00000080693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZR99	-

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Summary

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