Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Gene: LOC100360933 ENSRNOG00000036981

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Description

cDNA sequence BC048679-like [Source:RGD Symbol;Acc:2321127]

Location

Primary_assembly 1: 135,445,625-135,448,289 reverse strand.

mRatBN7.2:CM026974.1

About this gene

This gene has 2 transcripts (splice variants) and 42 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000094829.1	LOC100360933-202	810	172aa	ENSRNOP00000091080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AEY1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000055614.3	LOC100360933-201	573	166aa	ENSRNOP00000052476.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4ABH2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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