Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cbx5 ENSRNOG00000036841

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Description

chromobox 5 [Source:RGD Symbol;Acc:1306619]

Gene Synonyms

LOC300266

Location

Primary_assembly 7: 134,331,335-134,375,022 reverse strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 3 transcripts (splice variants), 203 orthologues, 34 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000055289.3	Cbx5-201	1161	191aa	ENSRNOP00000052163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2RYU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000089024.2	Cbx5-202	2908	185aa	ENSRNOP00000073453.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K5J8	-
ENSRNOT00000120168.1	Cbx5-203	828	185aa	ENSRNOP00000087859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A5A0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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