Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Casp12 ENSRNOG00000033434

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Description

caspase 12 [Source:RGD Symbol;Acc:621758]

Location

Primary_assembly 8: 2,642,434-2,674,037 forward strand.

mRatBN7.2:CM026981.1

About this gene

This gene has 3 transcripts (splice variants), 266 orthologues, 12 paralogues and is associated with 32 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109244.1	Casp12-203	4290	451aa	ENSRNOP00000088120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GFV1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000010243.6	Casp12-201	2453	425aa	ENSRNOP00000010244.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LNW4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000088553.2	Casp12-202	1284	427aa	ENSRNOP00000071294.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K041	-

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Summary

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