Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Slfnl1 ENSRNOG00000032183

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Description

schlafen-like 1 [Source:RGD Symbol;Acc:1564075]

Gene Synonyms

LOC500540

Location

Primary_assembly 5: 133,990,520-134,122,105 forward strand.

mRatBN7.2:CM026978.1

About this gene

This gene has 5 transcripts (splice variants), 221 orthologues, 16 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000114251.1	Slfnl1-205	3564	741aa	ENSRNOP00000078255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G1I2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000110529.1	Slfnl1-204	4045	672aa	ENSRNOP00000085585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A2M1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000078622.2	Slfnl1-203	3116	682aa	ENSRNOP00000072942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K483	-
ENSRNOT00000045954.5	Slfnl1-202	3004	642aa	ENSRNOP00000051099.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8XWQ9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000013193.4	Slfnl1-201	1924	413aa	ENSRNOP00000013193.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q683	-

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Summary

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