Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Col16a1 ENSRNOG00000031475

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Description

collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]

Gene Synonyms

LOC366474, MGC109452

Location

Primary_assembly 5: 147,672,601-147,727,011 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 3 transcripts (splice variants), 108 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000067663.4	Col16a1-201	5316	1608aa	ENSRNOP00000058947.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LND0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000114962.2	Col16a1-203	5212	1592aa	ENSRNOP00000077174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y198	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000100626.2	Col16a1-202	5197	1591aa	ENSRNOP00000089698.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A8Q5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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