Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Nova1 ENSRNOG00000031440

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Description

NOVA alternative splicing regulator 1 [Source:RGD Symbol;Acc:621345]

Gene Synonyms

Nova-1

Location

Primary_assembly 6: 69,506,983-69,632,437 reverse strand.

GRCr8:CM070396.1

About this gene

This gene has 4 transcripts (splice variants), 294 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000170778.1	Nova1-204	6922	483aa	ENSRNOP00000109714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HBF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000139436.1	Nova1-203	7096	385aa	ENSRNOP00000103777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HBF7	-
ENSRNOT00000137443.1	Nova1-202	7061	470aa	ENSRNOP00000109689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4AAF8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000083277.3	Nova1-201	6873	466aa	ENSRNOP00000069458.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVE8	-

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Summary

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