Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Rabggta ENSRNOG00000030483

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Description

Rab geranylgeranyltransferase subunit alpha [Source:RGD Symbol;Acc:621697]

Location

Primary_assembly 15: 33,176,099-33,183,271 reverse strand.

GRCr8:CM070405.1

About this gene

This gene has 3 transcripts (splice variants), 180 orthologues, 2 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000108610.2	Rabggta-203	1872	567aa	ENSRNOP00000091502.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJ12 A6KH43 Q08602	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000048455.6	Rabggta-201	2607	566aa	ENSRNOP00000049261.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QNR5	-
ENSRNOT00000099074.2	Rabggta-202	1863	547aa	ENSRNOP00000077243.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZK93	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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