Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Obox2l1 ENSRNOG00000029702

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Description

oocyte specific homeobox 2 like 1 [Source:RGD Symbol;Acc:1585091]

Gene Synonyms

LOC502295, LOC691325, RGD1564236

Location

Primary_assembly 1: 77,211,678-77,213,602 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 16 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000148691.1	Obox2l1-203	1481	362aa	ENSRNOP00000100971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000045660.4	Obox2l1-201	1129	311aa	ENSRNOP00000051380.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZYG1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000094214.2	Obox2l1-202	657	218aa	ENSRNOP00000093280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJS2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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