Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Cntnap5c ENSRNOG00000029556

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Description

contactin associated protein-like 5C [Source:RGD Symbol;Acc:1566343]

Gene Synonyms

Caspr5-2, Caspr5-4, Cntnap5, Cntnap5d, LOC297846, LOC304725, RGD1566343

Location

Primary_assembly 13: 3,521,703-4,565,772 forward strand.

GRCr8:CM070403.1

About this gene

This gene has 5 transcripts (splice variants), 18 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000164324.1	Cntnap5c-204	7559	1278aa	ENSRNOP00000105237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000165044.1	Cntnap5c-205	7856	1248aa	ENSRNOP00000110758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000146814.1	Cntnap5c-203	7692	1256aa	ENSRNOP00000110649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000125413.1	Cntnap5c-202	7671	1249aa	ENSRNOP00000101919.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000046060.6	Cntnap5c-201	4096	1253aa	ENSRNOP00000044394.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QLT5	-

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Summary

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