Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: C18h18orf54 ENSRNOG00000028677

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Description

similar to human chromosome 18 open reading frame 54 [Source:RGD Symbol;Acc:1563837]

Gene Synonyms

LOC361346, Las2

Location

Primary_assembly 18: 66,340,567-66,362,348 reverse strand.

GRCr8:CM070408.1

About this gene

This gene has 4 transcripts (splice variants) and 157 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000014670.9	C18h18orf54-201	3273	571aa	ENSRNOP00000014670.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UIV9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000109976.2	C18h18orf54-203	3117	519aa	ENSRNOP00000087271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GFU5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000102700.2	C18h18orf54-202	2985	475aa	ENSRNOP00000091089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GIR2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000115439.2	C18h18orf54-204	2276	251aa	ENSRNOP00000079222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQE5	-

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Summary

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