Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Zc3h18 ENSRNOG00000028501

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Description

zinc finger CCCH-type containing 18 [Source:RGD Symbol;Acc:1303257]

Gene Synonyms

Nhn1

Location

Primary_assembly 19: 67,343,434-67,388,399 forward strand.

GRCr8:CM070409.1

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101747.2	Zc3h18-203	3773	1007aa	ENSRNOP00000093359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000106092.2	Zc3h18-205	3825	983aa	ENSRNOP00000082197.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUH8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000104719.2	Zc3h18-204	3725	991aa	ENSRNOP00000088629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GGF2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000045657.8	Zc3h18-202	3705	947aa	ENSRNOP00000048376.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140TAG3 A6IZR5 Q6TQE1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000039273.7	Zc3h18-201	3639	925aa	ENSRNOP00000035933.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QI36	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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