Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Lca5l ENSRNOG00000028248

.

Description

lebercilin LCA5 like [Source:RGD Symbol;Acc:1562512]

Gene Synonyms

LOC498065

Location

Primary_assembly 11: 48,930,127-48,964,551 reverse strand.

GRCr8:CM070401.1

About this gene

This gene has 3 transcripts (splice variants), 146 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000108256.2	Lca5l-202	3117	734aa	ENSRNOP00000091461.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AG60	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000109801.2	Lca5l-203	2979	688aa	ENSRNOP00000085947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A3I7	-
ENSRNOT00000033486.8	Lca5l-201	2038	603aa	ENSRNOP00000038113.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140UHY0 Q66H14	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.