Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: LOC680039 ENSRNOG00000027623

.

Description

DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]

Location

Primary_assembly 14: 74,094,488-74,159,326 forward strand.

mRatBN7.2:CM026987.1

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000104509.1	LOC680039-202	6771	1422aa	ENSRNOP00000089487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A9Y3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000029191.7	LOC680039-201	6702	1399aa	ENSRNOP00000032427.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZYT3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000105299.1	LOC680039-203	6634	1312aa	ENSRNOP00000082924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZV02	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000107256.1	LOC680039-204	6187	1343aa	ENSRNOP00000084761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZZU8	-

.

Summary

.

.