Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
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Gene: Ccdc187 ENSRNOG00000027392

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Description

coiled-coil domain containing 187 [Source:RGD Symbol;Acc:1565512]

Gene Synonyms

LOC499759, RGD1565512

Location

Primary_assembly 3: 29,469,592-29,524,925 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 3 transcripts (splice variants) and 72 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105690.2	Ccdc187-202	7473	2090aa	ENSRNOP00000091202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GIU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000117358.2	Ccdc187-203	7567	2089aa	ENSRNOP00000086756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4B3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000036178.4	Ccdc187-201	7453	2051aa	ENSRNOP00000032369.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZUA4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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