Summary
- Splice variants
- Transcript comparison
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Sequence
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Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Gene: Ttc41 ENSRNOG00000026807

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Description

tetratricopeptide repeat domain 41 [Source:RGD Symbol;Acc:1302940]

Gene Synonyms

Gnn, MGC72977, Nt5dc3

Location

Primary_assembly 7: 23,011,740-23,075,716 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 5 transcripts (splice variants) and 63 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000139824.1	Ttc41-204	4693	1312aa	ENSRNOP00000103371.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000059545.6	Ttc41-202	4684	1309aa	ENSRNOP00000056301.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LQV7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000154529.1	Ttc41-205	4453	1232aa	ENSRNOP00000110261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000122498.1	Ttc41-203	4453	1232aa	ENSRNOP00000106666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000031946.8	Ttc41-201	4235	1292aa	ENSRNOP00000036382.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8WG20	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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