Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Ophn1 ENSRNOG00000026573

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Description

oligophrenin 1 [Source:RGD Symbol;Acc:1563435]

Gene Synonyms

LOC688676, Opn1

Location

Primary_assembly X: 67,643,252-68,016,831 reverse strand.

GRCr8:CM070411.1

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues, 3 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000034772.8	Ophn1-201	3739	802aa	ENSRNOP00000035867.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P0CAX5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000106069.2	Ophn1-202	2868	801aa	ENSRNOP00000096923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AVR8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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