Gene: Vps13a ENSRNOG00000025539

Description

vacuolar protein sorting 13 homolog A [Source:RGD Symbol;Acc:1311340]

Gene Synonyms

LOC309243, LOC361737, RGD1311340

Location

Primary_assembly 1: 223,328,784-223,555,331 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 8 transcripts (splice variants), 220 orthologues, 2 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000112707.2	Vps13a-204	10522	3456aa	ENSRNOP00000082655.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000102736.2	Vps13a-203	11144	3167aa	ENSRNOP00000085879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4A2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000098661.2	Vps13a-202	10832	3063aa	ENSRNOP00000077688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZJJ9	-
ENSRNOT00000168353.1	Vps13a-208	10389	3078aa	ENSRNOP00000103448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000144564.1	Vps13a-206	10363	3403aa	ENSRNOP00000107187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000148487.1	Vps13a-207	9419	3061aa	ENSRNOP00000106743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000142855.1	Vps13a-205	8961	2884aa	ENSRNOP00000099419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000014800.9	Vps13a-201	7005	2334aa	ENSRNOP00000014800.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A899	-

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Gene: Vps13a ENSRNOG00000025539

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Gene: Vps13a ENSRNOG00000025539

Summary

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