Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Efr3a ENSRNOG00000025528

.

Description

EFR3 homolog A [Source:RGD Symbol;Acc:1305976]

Gene Synonyms

LOC362923, RGD1305976

Location

Primary_assembly 7: 99,441,767-99,522,454 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 4 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000165815.1	Efr3a-204	5184	846aa	ENSRNOP00000106693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000045357.5	Efr3a-201	5309	819aa	ENSRNOP00000048877.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HRQ5 D4ADS9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000107204.2	Efr3a-203	5088	814aa	ENSRNOP00000077887.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y1P9	-
ENSRNOT00000102392.2	Efr3a-202	4130	783aa	ENSRNOP00000090413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ADR8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

.

Summary

.

.