Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Upk1a ENSRNOG00000024331

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Description

uroplakin 1A [Source:RGD Symbol;Acc:1309849]

Gene Synonyms

Cox6b, LOC365227

Location

Primary_assembly 1: 94,987,108-94,997,787 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 5 transcripts (splice variants), 141 orthologues, 31 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000141071.1	Upk1a-204	1612	279aa	ENSRNOP00000103035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000105462.2	Upk1a-202	1498	257aa	ENSRNOP00000097413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1L2C162	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000115298.2	Upk1a-203	1423	232aa	ENSRNOP00000083363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVR2	-
ENSRNOT00000033621.6	Upk1a-201	1412	235aa	ENSRNOP00000036268.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZDW5	-
ENSRNOT00000157664.1	Upk1a-205	1285	241aa	ENSRNOP00000105414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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