Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
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Gene: Cage1 ENSRNOG00000024111

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Description

cancer antigen 1 [Source:RGD Symbol;Acc:1306102]

Gene Synonyms

CAGE-1, Ctag3, LOC306872

Location

Primary_assembly 17: 26,995,078-27,033,754 forward strand.

GRCr8:CM070407.1

About this gene

This gene has 4 transcripts (splice variants) and 97 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000038349.6	Cage1-201	2923	857aa	ENSRNOP00000030214.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q66HB6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000123244.1	Cage1-203	3493	847aa	ENSRNOP00000101637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6J7B4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000111272.2	Cage1-202	2947	798aa	ENSRNOP00000077581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y609	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000169184.1	Cage1-204	2708	796aa	ENSRNOP00000101472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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