Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: Ccser2 ENSRNOG00000022781

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Description

coiled-coil serine-rich protein 2 [Source:RGD Symbol;Acc:1304626]

Gene Synonyms

Fam190b, Gcap14, LOC306306, RGD1304626

Location

Primary_assembly 16: 12,637,083-12,746,003 reverse strand.

GRCr8:CM070406.1

About this gene

This gene has 4 transcripts (splice variants), 248 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106370.2	Ccser2-203	3496	1036aa	ENSRNOP00000086338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A5N0 A6K9I4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000098179.2	Ccser2-202	3767	836aa	ENSRNOP00000077902.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y7Z5 A0A8I6GG47	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000016494.9	Ccser2-201	3581	833aa	ENSRNOP00000016494.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A4E5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000118095.2	Ccser2-204	1265	373aa	ENSRNOP00000087728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A7S7	-

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Summary

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