Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Lrrtm4 ENSRNOG00000021938

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Description

leucine rich repeat transmembrane neuronal 4 [Source:RGD Symbol;Acc:1560707]

Gene Synonyms

LOC500219, MGC188202, RGD1560707

Location

Primary_assembly 4: 114,103,870-114,109,726 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 3 transcripts (splice variants), 416 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000092261.3	Lrrtm4-202	3008	544aa	ENSRNOP00000075874.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0U1RRZ6 B4F7C5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000030588.7	Lrrtm4-201	3597	518aa	ENSRNOP00000034217.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LNW2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000092379.3	Lrrtm4-203	3487	519aa	ENSRNOP00000075837.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2RB96 A6IAG5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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