Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Shld1 ENSRNOG00000021268

.

Description

shieldin complex subunit 1 [Source:RGD Symbol;Acc:1597982]

Gene Synonyms

LOC681292

Location

Primary_assembly 3: 119,938,833-120,009,550 forward strand.

mRatBN7.2:CM026976.1

About this gene

This gene has 4 transcripts (splice variants), 108 orthologues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000112341.1	Shld1-203	1498	257aa	ENSRNOP00000084047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYL2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000117142.1	Shld1-204	1777	217aa	ENSRNOP00000097270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AUR4	-
ENSRNOT00000028891.7	Shld1-201	1673	209aa	ENSRNOP00000028891.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZVK4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000102243.1	Shld1-202	1480	207aa	ENSRNOP00000084844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A0G4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

.

Summary

.

.