Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Sf1 ENSRNOG00000021085

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Description

splicing factor 1 [Source:RGD Symbol;Acc:620645]

Gene Synonyms

Zfp162

Location

Primary_assembly 1: 213,099,260-213,113,590 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 4 transcripts (splice variants), 176 orthologues, 4 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000044866.7	Sf1-202	2035	641aa	ENSRNOP00000041676.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LM37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000100785.2	Sf1-203	3790	571aa	ENSRNOP00000079109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQ56	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000028628.9	Sf1-201	3449	593aa	ENSRNOP00000028628.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LSC3	-
ENSRNOT00000110004.2	Sf1-204	2307	638aa	ENSRNOP00000082510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G7I2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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