Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Patl1 ENSRNOG00000021052

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Description

PAT1 homolog 1, processing body mRNA decay factor [Source:RGD Symbol;Acc:1305514]

Gene Synonyms

LOC361736, Pat1b, RGD1305514

Location

Primary_assembly 1: 218,255,848-218,287,657 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 212 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000066247.5	Patl1-201	4051	770aa	ENSRNOP00000059542.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5DF93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000164192.1	Patl1-203	4021	760aa	ENSRNOP00000109279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000104600.2	Patl1-202	3898	763aa	ENSRNOP00000081398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRW2	-

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Summary

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