Summary
- Splice variants
- Transcript comparison
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Sequence
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Gene: Stx3 ENSRNOG00000021013

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Description

syntaxin 3 [Source:RGD Symbol;Acc:621005]

Gene Synonyms

Stx3a

Location

Primary_assembly 1: 217,909,169-218,110,466 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 10 transcripts (splice variants), 275 orthologues, 11 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000028498.8	Stx3-201	1524	419aa	ENSRNOP00000028498.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A4C4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000028535.7	Stx3-202	2677	289aa	ENSRNOP00000028535.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08849	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000119247.2	Stx3-206	2102	325aa	ENSRNOP00000078489.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZL11	-
ENSRNOT00000102678.2	Stx3-204	2056	325aa	ENSRNOP00000097210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AS91	-
ENSRNOT00000173608.1	Stx3-210	1909	276aa	ENSRNOP00000110442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000170925.1	Stx3-209	1362	316aa	ENSRNOP00000106131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000142473.1	Stx3-208	1138	272aa	ENSRNOP00000099055.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000120182.2	Stx3-207	1045	293aa	ENSRNOP00000097922.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GMR2	-
ENSRNOT00000112820.2	Stx3-205	991	287aa	ENSRNOP00000079624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZRD1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000094739.2	Stx3-203	953	283aa	ENSRNOP00000092371.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AGY3	-

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Summary

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