Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Gene: Ppfia3 ENSRNOG00000020731

Description

PTPRF interacting protein alpha 3 [Source:RGD Symbol;Acc:620054]

Gene Synonyms

LOC361573

Location

Primary_assembly 1: 104,953,598-104,982,278 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 274 orthologues, 5 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000028142.6	Ppfia3-201	4643	1192aa	ENSRNOP00000028142.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LSE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000100530.2	Ppfia3-202	4616	1183aa	ENSRNOP00000076551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5XV57	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000117622.2	Ppfia3-203	4592	1175aa	ENSRNOP00000084227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GBL7	-

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Gene: Ppfia3 ENSRNOG00000020731

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Gene: Ppfia3 ENSRNOG00000020731

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