Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
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Supporting evidence
ID History
- Gene history

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Gene: Brca1 ENSRNOG00000020701

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Description

BRCA1, DNA repair associated [Source:RGD Symbol;Acc:2218]

Gene Synonyms

BRCA-1

Location

Primary_assembly 10: 86,917,693-86,977,763 reverse strand.

GRCr8:CM070400.1

About this gene

This gene has 4 transcripts (splice variants), 199 orthologues and is associated with 60 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000140859.1	Brca1-203	6754	1833aa	ENSRNOP00000108202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000161138.1	Brca1-204	6833	1817aa	ENSRNOP00000099541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000083111.3	Brca1-202	6441	1795aa	ENSRNOP00000072366.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K2T3	-
ENSRNOT00000028109.5	Brca1-201	5397	1664aa	ENSRNOP00000028109.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V8S5	-

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Summary

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