Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: Pbxip1 ENSRNOG00000020673

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Description

PBX homeobox interacting protein 1 [Source:RGD Symbol;Acc:1305180]

Gene Synonyms

LOC310644

Location

Primary_assembly 2: 177,154,101-177,167,328 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 6 transcripts (splice variants), 101 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000117052.2	Pbxip1-203	3215	734aa	ENSRNOP00000097252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GLZ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000156869.1	Pbxip1-206	3585	704aa	ENSRNOP00000109099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000096588.2	Pbxip1-202	3215	734aa	ENSRNOP00000076654.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y678	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000028057.6	Pbxip1-201	3153	722aa	ENSRNOP00000028058.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VD12	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000127533.1	Pbxip1-205	2946	717aa	ENSRNOP00000102881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000117095.2	Pbxip1-204	2910	679aa	ENSRNOP00000097438.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GM25	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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