Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Pcdha3 ENSRNOG00000020119

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Description

protocadherin alpha 3 [Source:RGD Symbol;Acc:620336]

Location

Primary_assembly 18: 28,855,256-29,120,227 forward strand.

GRCr8:CM070408.1

About this gene

This gene has 10 transcripts (splice variants), 27 orthologues, 22 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000074028.3	Pcdha3-207	5515	1031aa	ENSRNOP00000066853.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000027340.7	Pcdha3-201	5848	1006aa	ENSRNOP00000027340.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767H7	-
ENSRNOT00000027383.8	Pcdha3-203	5708	963aa	ENSRNOP00000027383.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I6	-
ENSRNOT00000027393.7	Pcdha3-204	5543	980aa	ENSRNOP00000027393.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I7	-
ENSRNOT00000079794.3	Pcdha3-210	5489	963aa	ENSRNOP00000075260.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I8-1	-
ENSRNOT00000077824.3	Pcdha3-209	5462	980aa	ENSRNOP00000074100.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I6LBW4	-
ENSRNOT00000071366.3	Pcdha3-206	5453	950aa	ENSRNOP00000065957.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767J0	-
ENSRNOT00000027402.5	Pcdha3-205	5447	948aa	ENSRNOP00000027402.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767J1	-
ENSRNOT00000075810.4	Pcdha3-208	5447	949aa	ENSRNOP00000066774.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8XGC7	-
ENSRNOT00000027372.8	Pcdha3-202	5447	949aa	ENSRNOP00000027372.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q767I4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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