Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
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Molecular interactions
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ID History
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Gene: Sycn ENSRNOG00000019879

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Description

syncollin [Source:RGD Symbol;Acc:620862]

Gene Synonyms

Syl

Location

Primary_assembly 1: 92,947,285-92,961,074 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 4 transcripts (splice variants) and 119 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000127816.1	Sycn-202	980	215aa	ENSRNOP00000110486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000026907.7	Sycn-201	895	189aa	ENSRNOP00000026907.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O35775	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000163818.1	Sycn-203	573	131aa	ENSRNOP00000109376.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000168689.1	Sycn-204	517	131aa	ENSRNOP00000108031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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