Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ctf1 ENSRNOG00000018962

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Description

cardiotrophin 1 [Source:RGD Symbol;Acc:2442]

Gene Synonyms

CT-1

Location

Primary_assembly 1: 191,757,477-191,776,395 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 8 transcripts (splice variants), 87 orthologues, 2 paralogues and is associated with 17 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000161257.1	Ctf1-208	780	247aa	ENSRNOP00000100511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000103205.2	Ctf1-202	1652	195aa	ENSRNOP00000089496.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ABW6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000157404.1	Ctf1-205	1596	196aa	ENSRNOP00000109691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000025646.4	Ctf1-201	1355	201aa	ENSRNOP00000025646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UK35	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000135427.1	Ctf1-203	873	220aa	ENSRNOP00000099529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000157597.1	Ctf1-207	870	241aa	ENSRNOP00000106768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000157444.1	Ctf1-206	857	203aa	ENSRNOP00000112131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000151776.1	Ctf1-204	796	219aa	ENSRNOP00000108344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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