Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Gene: Cystm1 ENSRNOG00000018775

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Description

cysteine-rich transmembrane module containing 1 [Source:RGD Symbol;Acc:2323233]

Gene Synonyms

LOC100363310

Location

Primary_assembly 18: 28,220,004-28,287,574 forward strand.

GRCr8:CM070408.1

About this gene

This gene has 4 transcripts (splice variants) and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000168588.1	Cystm1-204	826	133aa	ENSRNOP00000103999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000025495.9	Cystm1-201	968	131aa	ENSRNOP00000025495.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZR95	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000094556.2	Cystm1-203	914	101aa	ENSRNOP00000080522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQ00 A6J307	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000068085.5	Cystm1-202	525	103aa	ENSRNOP00000061418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6J308 D4A713	-

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Summary

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