Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Iffo1 ENSRNOG00000018533

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Description

intermediate filament family orphan 1 [Source:RGD Symbol;Acc:1308257]

Gene Synonyms

LOC362437, RGD1308257

Location

Primary_assembly 4: 159,630,763-159,648,527 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 3 transcripts (splice variants), 268 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000104044.2	Iffo1-202	3445	694aa	ENSRNOP00000090501.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ACM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000113959.2	Iffo1-203	3098	605aa	ENSRNOP00000085110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1J1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000048379.4	Iffo1-201	2372	562aa	ENSRNOP00000041102.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6ILS2 D3ZQI9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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