Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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ID History
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Gene: Prpf18 ENSRNOG00000018396

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Description

pre-mRNA processing factor 18 [Source:RGD Symbol;Acc:708550]

Gene Synonyms

KCRF, LOC171552, Pprf18

Location

Primary_assembly 17: 78,539,839-78,600,250 forward strand.

GRCr8:CM070407.1

About this gene

This gene has 4 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000110607.2	Prpf18-203	2269	370aa	ENSRNOP00000096726.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ATV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000024872.7	Prpf18-201	5469	351aa	ENSRNOP00000024872.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JKB8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000111512.2	Prpf18-204	2565	342aa	ENSRNOP00000083623.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZZP7 A6JM01	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000091554.3	Prpf18-202	1172	347aa	ENSRNOP00000074228.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K7J2	-

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Summary

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