Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Usp40 ENSRNOG00000018395

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Description

ubiquitin specific peptidase 40 [Source:RGD Symbol;Acc:1309613]

Gene Synonyms

LOC100911860, LOC316599, LRRGT00071

Location

Primary_assembly 9: 96,055,741-96,126,721 reverse strand.

GRCr8:CM070399.1

About this gene

This gene has 5 transcripts (splice variants), 192 orthologues and 50 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000064171.4	Usp40-201	5246	1235aa	ENSRNOP00000060806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZL95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000085325.3	Usp40-204	5192	1217aa	ENSRNOP00000074830.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K923	-
ENSRNOT00000126955.1	Usp40-205	5102	1187aa	ENSRNOP00000112752.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000064642.5	Usp40-202	4979	1146aa	ENSRNOP00000059419.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A2R6	-
ENSRNOT00000070819.4	Usp40-203	3872	815aa	ENSRNOP00000064567.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8J8XW61	-

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Summary

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