Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Abca1 ENSRNOG00000018126

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Description

ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]

Location

Primary_assembly 5: 72,473,676-72,596,473 reverse strand.

GRCr8:CM070395.1

About this gene

This gene has 3 transcripts (splice variants), 304 orthologues, 15 paralogues and is associated with 34 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000110113.2	Abca1-202	10322	2263aa	ENSRNOP00000078596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZLK5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000024564.9	Abca1-201	10316	2261aa	ENSRNOP00000024564.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KDN7 F1LNL3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000114269.2	Abca1-203	10283	2250aa	ENSRNOP00000095590.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ATT1	-

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Summary

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