Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Usp6nl ENSRNOG00000017644

.

Description

USP6 N-terminal like [Source:RGD Symbol;Acc:1311786]

Gene Synonyms

LOC291309

Location

Primary_assembly 17: 76,739,906-76,865,373 reverse strand.

GRCr8:CM070407.1

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues, 31 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000112117.2	Usp6nl-204	5288	839aa	ENSRNOP00000093675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AXD4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000105956.2	Usp6nl-203	5258	833aa	ENSRNOP00000085611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A486	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000046266.4	Usp6nl-201	5241	816aa	ENSRNOP00000046740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JLX0 D3ZL57	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000103406.2	Usp6nl-202	5097	760aa	ENSRNOP00000096234.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GH29 A0A8I6GLZ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.