Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RGD1308601 ENSRNOG00000017215

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Description

RIKEN cDNA 8030462N17 gene [Source:MGI Symbol;Acc:MGI:2444951]

Gene Synonyms

LOC100909715, LOC307249

Location

Primary_assembly 18: 71,157,700-71,243,482 reverse strand.

mRatBN7.2:CM026991.1

About this gene

This gene has 3 transcripts (splice variants), 214 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000038767.6	RGD1308601-201	3148	399aa	ENSRNOP00000035406.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A3X1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000108062.1	RGD1308601-203	6468	245aa	ENSRNOP00000083217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZW45	-
ENSRNOT00000103893.1	RGD1308601-202	3396	343aa	ENSRNOP00000086540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GF24	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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