Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Structural variants
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Gene: Tcf25 ENSRNOG00000017023

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Description

transcription factor 25 [Source:RGD Symbol;Acc:1309054]

Gene Synonyms

LOC292082, RGD1309054

Location

Primary_assembly 19: 68,323,867-68,358,240 forward strand.

GRCr8:CM070409.1

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105294.2	Tcf25-204	5041	677aa	ENSRNOP00000096792.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AR72	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000099662.2	Tcf25-203	5008	666aa	ENSRNOP00000096680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASZ5	-
ENSRNOT00000046155.8	Tcf25-201	3296	669aa	ENSRNOP00000048508.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZC46	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000096732.2	Tcf25-202	2930	602aa	ENSRNOP00000088994.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GHP2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000112610.2	Tcf25-205	2157	623aa	ENSRNOP00000080994.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZS26	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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