Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Sycp1 ENSRNOG00000016835

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Description

synaptonemal complex protein 1 [Source:RGD Symbol;Acc:3794]

Gene Synonyms

SCP-1, SCP1

Location

Primary_assembly 2: 192,984,621-193,145,421 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 5 transcripts (splice variants), 180 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000131954.1	Sycp1-204	4340	997aa	ENSRNOP00000108482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K3J6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000124394.1	Sycp1-203	4286	979aa	ENSRNOP00000101801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000163176.1	Sycp1-205	4274	978aa	ENSRNOP00000106648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000102018.2	Sycp1-202	3311	910aa	ENSRNOP00000078830.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZLK1	-
ENSRNOT00000023333.7	Sycp1-201	3306	921aa	ENSRNOP00000023333.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LS76	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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