Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Gene: Zfp236 ENSRNOG00000016303

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Description

zinc finger protein 236 [Source:RGD Symbol;Acc:1309670]

Gene Synonyms

LOC291409

Location

Primary_assembly 18: 78,251,248-78,347,236 reverse strand.

GRCr8:CM070408.1

About this gene

This gene has 9 transcripts (splice variants), 216 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107666.2	Zfp236-204	9925	1870aa	ENSRNOP00000090560.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AB41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000111597.2	Zfp236-205	9859	1848aa	ENSRNOP00000089231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AC96	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000114662.2	Zfp236-206	9811	1832aa	ENSRNOP00000084581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZXK0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000022086.9	Zfp236-201	9808	1831aa	ENSRNOP00000022086.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LXC0	-
ENSRNOT00000142708.1	Zfp236-208	9727	1804aa	ENSRNOP00000102210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000095113.2	Zfp236-202	9715	1800aa	ENSRNOP00000085450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A431	-
ENSRNOT00000134404.1	Zfp236-207	9679	1788aa	ENSRNOP00000101311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000156157.1	Zfp236-209	9679	1780aa	ENSRNOP00000106294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000103278.2	Zfp236-203	9559	1748aa	ENSRNOP00000076412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZJ55	-

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Summary

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