Summary
- Splice variants
- Transcript comparison
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Sequence
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Comparative Genomics
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- Orthologues
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Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
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Genetic Variation
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Gene: Pdcd4 ENSRNOG00000014779

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Description

programmed cell death 4 [Source:RGD Symbol;Acc:620816]

Gene Synonyms

Dug

Location

Primary_assembly 1: 252,921,392-252,944,275 forward strand.

mRatBN7.2:CM026974.1

About this gene

This gene has 4 transcripts (splice variants), 201 orthologues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000119971.1	Pdcd4-204	1748	469aa	ENSRNOP00000076366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DM93 Q9JID1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000020155.4	Pdcd4-201	2303	467aa	ENSRNOP00000020155.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JID1-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000097657.1	Pdcd4-202	1637	432aa	ENSRNOP00000091790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9JID1	-
ENSRNOT00000104317.1	Pdcd4-203	1589	467aa	ENSRNOP00000076788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y727	-

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Summary

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