Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Vapa ENSRNOG00000014765

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Description

VAMP associated protein A [Source:RGD Symbol;Acc:61803]

Gene Synonyms

VAMP-A, VAP-33, VAP-A

Location

Primary_assembly 9: 112,624,794-112,654,731 reverse strand.

GRCr8:CM070399.1

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000113264.2	Vapa-203	1725	290aa	ENSRNOP00000083505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVH7 A6JRB8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000086340.3	Vapa-202	1650	272aa	ENSRNOP00000074577.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K8E6 A0A8I6GHY4	-
ENSRNOT00000020681.8	Vapa-201	1602	249aa	ENSRNOP00000020681.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JRB7 Q9Z270	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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