Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Vps28 ENSRNOG00000014633

.

Description

VPS28 subunit of ESCRT-I [Source:RGD Symbol;Acc:1306537]

Gene Synonyms

LOC300052, MGC188842

Location

Primary_assembly 7: 110,222,638-110,225,569 reverse strand.

GRCr8:CM070397.1

About this gene

This gene has 3 transcripts (splice variants), 189 orthologues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000019707.8	Vps28-201	838	228aa	ENSRNOP00000019707.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UHM0 B5DEN9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000108573.2	Vps28-203	808	220aa	ENSRNOP00000088292.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AAI1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000103642.2	Vps28-202	805	219aa	ENSRNOP00000081278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZS68	-

.

Summary

.

.